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5 hours for 6 lines of code. Math is awesome and stuff, but translating matlab code into python and then extending it without knowing what it does (so you have to understand it first), well, is sometimes exhausting.
But after all this time I am so happy that it works and that I fully understand all the math behind it. And now I have to compare it to the other 6 methods I created for this task.. Yay.
random
nystroem approximation
double centering
non-metric data in a metric tree